AMP Assay Kits
Synonyms :
- adenosine monophosphate
- adenosine 5'-monophosphate
- 5' adenylate monophosphate
- rAMP
- 5' rAMP
Config Rule :
% 'AMP' config('AMP',[ substituent('D-1-dehydroxy-5-oxy-ribofuranosyl'), substituent(adenyl), substituent(phosphoryl), linkage(from('D-1-dehydroxy-5-oxy-ribofuranosyl',car(1)), to(adenyl,nit(9)), up,single), linkage(from(phosphoryl,pho(1)), to('D-1-dehydroxy-5-oxy-ribofuranosyl',attach_to([oxy,car(5)])), nil,single)]). config('D-1-dehydroxy-5-oxy-ribofuranosyl',[ ring([ oxy, anomeric(1,hyd), car(2,hyd&&hydroxyl;), car(3,hyd&&hydroxyl;), car(4,oxymethyl&&hyd;)])]). config(adenyl,[ model(adenine,[ diff(nit(9,hyd),nit(9))])]). config(adenine,[ model(purine,[ diff(car(6,hyd),car(6,amine(10)))])]). config(purine,[ ring_system([ ring([ car(6,hyd)&, car(5)&, car(4)&, nit(3)&, car(2,hyd)&, nit(1)&]), ring([ nit(7)&, car(8,hyd)&, nit(9,hyd)&, car(4)&, car(5)&])], conjugate(1,pseudopos([car(4),car(5)]),2,pseudopos([car(4),car(5)]))])]).
Smiles String :
[C@2H]-1([O][C@2H]([C@2H]([OH])[C@2H]-1[OH])[C@2H2][O][P@2](=[O])([O-])[O-])-[n_ ]1([cH][n][c]2([c]1[n][cH][n][c]2[NH2])) 'AMP'
Terminal :
% 'AMP'
c(1,12,(0,chiral))-[c(2,left)~,o(1,right)~,n(9,up)~,h(1,down)~],
c(2,12,(0,chiral))-[c(3,left)~,c(1,right)~,h(2,up)~,o(2,down)~],
c(3,12,(0,chiral))-[c(4,left)~,c(2,right)~,h(4,up)~,o(3,down)~],
c(4,12,(0,chiral))-[o(1,left)~,c(3,right)~,c(5,up)~,h(6,down)~],
c(5,12,(0,nonchiral))-[h(7,left)~,h(8,right)~,o(4,up)~,c(4,down)~],
c(6,12,(0,nonchiral))-[h(11,nil)~,n(3,flat)&,n(1,flat)&],
c(8,12,(0,nonchiral))-[n(3,flat)&,c(9,flat)&,n(9,flat)&],
c(9,12,(0,nonchiral))-[c(8,flat)&,c(10,flat)&,n(7,flat)&],
c(10,12,(0,nonchiral))-[n(10,nil)~,n(1,flat)&,c(9,flat)&],
c(12,12,(0,nonchiral))-[h(12,nil)~,n(7,flat)&,n(9,flat)&],
h(1,1,(0,nonchiral))-[c(1,up)~],
h(2,1,(0,nonchiral))-[c(2,down)~],
h(3,1,(0,nonchiral))-[o(2,nil)~],
h(4,1,(0,nonchiral))-[c(3,down)~],
h(5,1,(0,nonchiral))-[o(3,nil)~],
h(6,1,(0,nonchiral))-[c(4,up)~],
h(7,1,(0,nonchiral))-[c(5,right)~],
h(8,1,(0,nonchiral))-[c(5,left)~],
h(9,1,(0,nonchiral))-[n(10,nil)~],
h(10,1,(0,nonchiral))-[n(10,nil)~],
h(11,1,(0,nonchiral))-[c(6,nil)~],
h(12,1,(0,nonchiral))-[c(12,nil)~],
n(1,14,(0,nonchiral))-[c(6,flat)&,c(10,flat)&],
n(3,14,(0,nonchiral))-[c(6,flat)&,c(8,flat)&],
n(7,14,(0,nonchiral))-[c(9,flat)&,c(12,flat)&],
n(9,14,(0,nonchiral))-[c(1,down)~,c(12,flat)&,c(8,flat)&],
n(10,14,(0,nonchiral))-[h(9,nil)~,h(10,nil)~,c(10,nil)~],
o(1,16,(0,nonchiral))-[c(1,left)~,c(4,right)~],
o(2,16,(0,nonchiral))-[h(3,nil)~,c(2,up)~],
o(3,16,(0,nonchiral))-[h(5,nil)~,c(3,up)~],
o(4,16,(0,nonchiral))-[p(1,right)~,c(5,down)~],
o(5,16,(-6.666666666666666E-01,nonchiral))-[p(1,left)?],
o(6,16,(-6.666666666666666E-01,nonchiral))-[p(1,up)?],
o(7,16,(-6.666666666666666E-01,nonchiral))-[p(1,down)?],
p(1,31,(0,nonchiral))-[o(4,left)~,o(5,right)?,o(7,up)?,o(6,down)?]